Reproducible Science - Automation

Tutorial on creating a reproducible python package.

Contents:

• Introduction
  • Module Learning Objectives
  • Why is this important?
  • Requirements
• Deploying An Application
  • Setup Tapis CLI
  • Docker CLI Tangent
  • Copy an Application from Github
  • Find deploymentPath
  • Edit the app.ini file
  • Deploy the Application
• Deploying an Actor
  • Copy a Reactor from Github
  • Edit actor.ini and config.yml
  • Deploy the Actor
  • Create a FastQC Folder
  • Create File System Notifications
  • Upload and Test
• Troubleshooting
  • Notifications
  • Reactor
  • Application

Reproducible Science

• Main
• Introduction to Using High Performance Computing
• Git
• Containers